Prof. Itay Mayrose Lab - Plant Evolution, bioinformatics, & comparative genomics

rubus


Ploidy
Estimates
Phylogenetic
Tree
CCDB
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Ploidy Estimates:

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Chromosome count ? Ploidy inference ? Ploidy classification reliability ? Phylogenetically reliable ? Ploidy age ?
rubus nivalis 7 Diploid 1.00 True
rubus hypomalacus 14 Polyploid 1.00 True 11.61
rubus moschus 7 Diploid 1.00 True
rubus silvaticus 14 Polyploid 1.00 True 0.48
rubus foliosus 14 Polyploid 1.00 True 2.58
rubus orthostachys 14 Polyploid 1.00 True 2.48
rubus franconicus 14 Polyploid 1.00 True 2.48
rubus dollnensis 14 Polyploid 1.00 True 2.36
rubus canescens 7 Diploid 1.00 True
rubus vratnensis 14 Polyploid 1.00 True 6.09
rubus tabanimontanus 14 Polyploid 1.00 True 5.37
rubus schleicheri 14 Polyploid 1.00 True 7.61
rubus gracilis 14 Polyploid 1.00 True 13.05
rubus conothyrsoides 14 Polyploid 1.00 True 1.06
rubus pedemontanus 14 Polyploid 1.00 True 1.28
rubus ulmifolius 7 Diploid 1.00 False
rubus sanctus 7 Diploid 1.00 True
rubus pyramidalis 14 Polyploid 1.00 True 6.63
rubus praecox 14 Polyploid 1.00 True 4.55
rubus radula 14 Polyploid 1.00 True 4.78
rubus bifrons 14 Polyploid 1.00 True 9.75
rubus vestitus 14 Polyploid 1.00 True 10.37
rubus camptostachys 14 Polyploid 1.00 True 13.58
rubus caesius 14 Polyploid 1.00 True 12.23
rubus fasciculatus 14 Polyploid 1.00 True 12.82
rubus constrictus 14 Polyploid 1.00 True 8.42
rubus sprengelii 14 Polyploid 1.00 True 8.67
rubus wimmerianus 14 Polyploid 1.00 True 9.26
rubus sulcatus 14 Polyploid 1.00 True 9.26
rubus elegantispinosus 14 Polyploid 1.00 True 19.78
rubus plicatus 14 Polyploid 1.00 True 20.41
rubus divaricatus 14 Polyploid 1.00 True 20.78
rubus ursinus 28 Polyploid 1.00 True 13.06
rubus cuneifolius 7 Diploid 1.00 True
rubus nessensis 14 Polyploid 1.00 True 7.69
rubus allegheniensis 7 Diploid 1.00 True
rubus flagellaris 21 Polyploid 1.00 True 28.20
rubus australis 14 Polyploid 1.00 True 8.98
rubus geoides 14 Polyploid 1.00 True 9.49
rubus setchuenensis 14 Polyploid 1.00 True 17.48
rubus tephrodes 14 Polyploid 1.00 True 26.37
rubus swinhoei 14 Polyploid 1.00 True 26.37
rubus calycinus 21 Polyploid 1.00 True 3.69
rubus pectinellus 21 Polyploid 1.00 True 4.66
rubus lambertianus 14 Polyploid 1.00 True 26.37
rubus tricolor 14 Polyploid 1.00 True 26.37
rubus ichangensis 14 Polyploid 1.00 True 8.96
rubus alceifolius 14 Polyploid 1.00 True 16.39
rubus arcticus subsp. acaulis 7 Diploid 1.00 True
rubus occidentalis 7 Diploid 1.00 True
rubus pungens 7 Diploid 1.00 True
rubus saxatilis 14 Polyploid 1.00 True 26.10
rubus rosifolius 7 Diploid 1.00 True
rubus hirsutus 7 Diploid 1.00 True
rubus corchorifolius 7 Diploid 1.00 True
rubus trifidus 7 Diploid 1.00 True
rubus crataegifolius 7 Diploid 1.00 True
rubus palmatus 7 Diploid 1.00 True
rubus macilentus 7 Diploid 1.00 True
rubus ellipticus 7 Diploid 1.00 True
rubus spectabilis 7 Diploid 1.00 True
rubus arcticus 7 Diploid 1.00 True
rubus innominatus 7 Diploid 1.00 True
rubus phoenicolasius 7 Diploid 1.00 True
rubus parvifolius 7 Diploid 1.00 True
rubus coreanus 7 Diploid 1.00 True
rubus lasiostylus 7 Diploid 1.00 True
rubus niveus 7 Diploid 1.00 True
rubus idaeus subsp. strigosus 7 Diploid 1.00 True
rubus idaeus 7 Diploid 1.00 True
rubus odoratus 7 Diploid 1.00 True
rubus chamaemorus 28 Polyploid 1.00 True 35.08
rubus lasiococcus 7 Diploid 1.00 True
rubus biflorus 7 Diploid 1.00 True
rubus rudis 14 Polyploid 1.00 True 42.61
rubus ribisoideus 7 Diploid 1.00 True
rubus pubescens 7 Diploid 1.00 True
rubus parvus 14 Polyploid 1.00 True 42.77
rubus pedatus 7 Diploid 1.00 True
rubus pinnatisepalus 21 Polyploid 1.00 True 42.26
rubus pirifolius 21 Polyploid 1.00 True 41.80
rubus canadensis 7 Diploid 1.00 True
rubus croceacanthus 7 Diploid 1.00 True
rubus hongnoensis 7 Diploid 1.00 True
rubus buergeri 28 Polyploid 1.00 True 41.76
rubus fruticosus 14 Polyploid 1.00 True 41.61
rubus vigorosus 14 Polyploid 1.00 True 41.84
rubus leucodermis 7 Diploid 1.00 True
rubus hispidus 7 Diploid 1.00 True
rubus trivialis 7 Diploid 1.00 True
rubus humulifolius 7 Diploid 1.00 True
rubus macraei 21 Polyploid 1.00 True 41.77
rubus parviflorus 7 Diploid 1.00 True
rubus argutus 7 Diploid 1.00 True
rubus chingii 7 Diploid 1.00 True
rubus nemorosus 14 Polyploid 1.00 True 41.99
rubus loganobaccus 21 Polyploid 1.00 True 42.14
rubus flosculosus 7 Diploid 1.00 True
rubus adenophorus 7 Diploid 1.00 True
rubus senticosus 14 Polyploid 1.00 True 41.52
rubus sciocharis 14 Polyploid 1.00 True 41.54
rubus diversus 14 Polyploid 1.00 True 42.18
rubus lindebergii 14 Polyploid 1.00 True 41.98
rubus taitoensis 7 Diploid 1.00 True
rubus mercicus 14 Polyploid 1.00 True 41.86
rubus koehleri 14 Polyploid 1.00 True 41.22
rubus apricus 14 Polyploid 1.00 True 41.90
rubus proiectus 14 Polyploid 1.00 True 42.36
rubus britannicus 21 Polyploid 1.00 True 41.51
rubus yenosimanus 7 Diploid 1.00 True
rubus grayanus 7 Diploid 1.00 True
rubus opacus 14 Polyploid 1.00 True 41.80
rubus lindleianus 14 Polyploid 1.00 True 42.49
rubus leucocarpus 14 Polyploid 1.00 True 40.92
rubus angustifrons 14 Polyploid 1.00 True 42.10
rubus conjungens 14 Polyploid 1.00 True 42.68
rubus bertramii 14 Polyploid 1.00 True 40.96
rubus rivularis 14 Polyploid 1.00 True 42.01
rubus alumnus 14 Polyploid 1.00 True 42.40
rubus macrophyllus 14 Polyploid 1.00 True 41.93
rubus lusaticus 14 Polyploid 1.00 True 41.46
rubus mollis 14 Polyploid 1.00 True 42.23
rubus muenteri 14 Polyploid 1.00 True 42.19
rubus sieboldii 14 Polyploid 1.00 True 42.48
rubus pseudoacer 7 Diploid 1.00 True
rubus liui 14 Polyploid 1.00 True 42.58
rubus arrhenii 14 Polyploid 1.00 True 42.60
rubus illecebrosus 7 Diploid 1.00 True
rubus salisburgensis 14 Polyploid 1.00 True 41.37
rubus pictorum 21 Polyploid 1.00 True 41.93
rubus paniculatus 7 Diploid 1.00 True
rubus platyacanthus 14 Polyploid 1.00 True 41.74
rubus apetalus 7 Diploid 1.00 True
rubus drejeri 14 Polyploid 1.00 True 42.48
rubus microphyllus 7 Diploid 1.00 True
rubus scissus 14 Polyploid 1.00 True 41.74
rubus formosensis 14 Polyploid 1.00 True 42.20
rubus pseudojaponicus 7 Diploid 1.00 True
rubus indicus 28 Polyploid 1.00 True 42.01
rubus rhombifolius 14 Polyploid 1.00 True 42.16
rubus chaerophyllus 14 Polyploid 1.00 True 41.93
rubus macrothyrsus 7 Diploid 1.00 True
rubus pascuus 14 Polyploid 1.00 True 41.29
rubus josefianus 14 Polyploid 1.00 True 43.29
rubus parviaraliifolius 7 Diploid 1.00 True
rubus dasyphyllus 14 Polyploid 1.00 True 42.26
rubus cockburnianus 7 Diploid 1.00 True
rubus capitulatus 21 Polyploid 1.00 True 42.65
rubus nemoralis 14 Polyploid 1.00 True 41.09
rubus vallisparsus 14 Polyploid 1.00 True 41.94
rubus nishimuranus 14 Polyploid 1.00 True 41.70
rubus adspersus 14 Polyploid 1.00 True 42.70
rubus moluccanus 14 Polyploid 1.00 True 41.46
rubus apiculatus 14 Polyploid 1.00 True 41.84
rubus formidabilis 14 Polyploid 1.00 True 41.39
rubus bavaricus 14 Polyploid 1.00 True 41.16
rubus ludwigii 7 Diploid 1.00 True
rubus epipsilos 14 Polyploid 1.00 True 42.28
rubus recurvans 18 Polyploid 1.00 True 39.50
rubus silesiacus 14 Polyploid 1.00 True 41.94
rubus lividus 14 Polyploid 1.00 True 42.18
rubus longepedicellatus 7 Diploid 1.00 True
rubus nesiotes 14 Polyploid 1.00 True 42.22
rubus questieri 14 Polyploid 1.00 True 42.04
rubus peltatus 7 Diploid 1.00 True
rubus newbridgensis 14 Polyploid 1.00 True 41.71
rubus hirtus 14 Polyploid 1.00 True 42.00
rubus egregius 14 Polyploid 1.00 True 42.24
rubus medius 7 Diploid 1.00 True
rubus axillaris 14 Polyploid 1.00 True 41.74
rubus vulgaris 14 Polyploid 1.00 True 41.81
rubus micans 14 Polyploid 1.00 True 42.21
rubus hercynicus 14 Polyploid 1.00 True 41.81
rubus nigakuma 7 Diploid 1.00 True
rubus scaber 14 Polyploid 1.00 True 42.06
rubus vernus 7 Diploid 1.00 True
rubus marssonianus 14 Polyploid 1.00 True 41.98
rubus babingtonianus 14 Polyploid 1.00 True 41.78
rubus gratus 14 Polyploid 1.00 True 42.35
rubus pinnatus 14 Polyploid 1.00 True 40.89
rubus lidforssii 14 Polyploid 1.00 True 41.24
rubus amplificatus 14 Polyploid 1.00 True 41.70
rubus dumnoniensis 14 Polyploid 1.00 True 41.49
rubus xanthocarpus 7 Diploid 1.00 True
rubus siemianicensis 14 Polyploid 1.00 True 42.46
rubus calvatus 14 Polyploid 1.00 True 41.48
rubus laciniatus 14 Polyploid 1.00 True 42.56
rubus polyoplus 14 Polyploid 1.00 True 41.77
rubus boraeanus 14 Polyploid 1.00 True 42.20
rubus gelertii 14 Polyploid 1.00 True 40.72
rubus okinawensis 7 Diploid 1.00 True
rubus rugosus 28 Polyploid 1.00 True 41.65
rubus polyanthemus 14 Polyploid 1.00 True 42.22
rubus infestus 14 Polyploid 1.00 True 42.38
rubus indusiatus 14 Polyploid 1.00 True 41.81
rubus bloxamii 14 Polyploid 1.00 True 42.44
rubus guentheri 14 Polyploid 1.00 True 41.35
rubus septentrionalis 14 Polyploid 1.00 True 42.84
rubus kawakamii 14 Polyploid 1.00 True 42.07
rubus simplex 7 Diploid 1.00 True
rubus hevellicus 14 Polyploid 1.00 True 41.55
rubus laudatus 7 Diploid 1.00 True
rubus hartmanii 14 Polyploid 1.00 True 41.92
rubus calycinoides 7 Diploid 1.00 True
rubus echinatus 14 Polyploid 1.00 True 42.12
rubus centrobohemicus 14 Polyploid 1.00 True 41.41
rubus ferocior 14 Polyploid 1.00 True 41.05
rubus caflischii 14 Polyploid 1.00 True 42.31
rubus pfuhlianus 14 Polyploid 1.00 True 42.24
rubus clusii 14 Polyploid 1.00 True 41.92
rubus rosanthus 14 Polyploid 1.00 True 41.02
rubus grantii 14 Polyploid 1.00 True 42.61
rubus calvus 14 Polyploid 1.00 True 42.46
rubus brdensis 14 Polyploid 1.00 True 42.17
rubus angustipaniculatus 14 Polyploid 1.00 True 41.23
rubus ostroviensis 14 Polyploid 1.00 True 41.32
rubus utchinensis 14 Polyploid 1.00 True 42.58
rubus sumatranus 7 Diploid 1.00 True
rubus amisiensis 14 Polyploid 1.00 True 42.54
rubus gothicus 14 Polyploid 1.00 True 41.68
rubus amphimalacus 14 Polyploid 1.00 True 41.22
rubus acanthodes 14 Polyploid 1.00 True 41.95
rubus scidularum 14 Polyploid 1.00 True 41.10
rubus toyorensis 7 Diploid 1.00 True
rubus seebergensis 14 Polyploid 1.00 True 42.83
rubus rhytidophyllus 14 Polyploid 1.00 True 43.43
rubus posnaniensis 14 Polyploid 1.00 True 42.57
rubus circipanicus 14 Polyploid 1.00 True 42.45
rubus racemosus 7 Diploid 1.00 True
rubus wessbergii 14 Polyploid 1.00 True 43.78
rubus schnedleri 14 Polyploid 1.00 True 42.75
rubus atrichantherus 14 Polyploid 1.00 True 42.30
rubus fairholmianus 28 Polyploid 1.00 True 41.90
rubus geminatus 14 Polyploid 1.00 True 41.70
rubus chaerophylloides 14 Polyploid 1.00 True 41.33
rubus hadracanthus 14 Polyploid 1.00 True 42.12
rubus glivicensis 14 Polyploid 1.00 True 41.82
rubus armeniacus 14 Polyploid 1.00 True 42.67
rubus asperidens 14 Polyploid 1.00 True 42.22
rubus czarnunensis 14 Polyploid 1.00 True 41.57
rubus orthostachyoides 14 Polyploid 1.00 True 42.10
rubus perdemissus 14 Polyploid 1.00 True 42.65
rubus spribillei 14 Polyploid 1.00 True 42.32
rubus neglectus 7 Diploid 1.00 True
rubus mesogaeus 7 Diploid 1.00 True
rubus lambertianus var. glandulosus 7 Diploid 1.00 True
rubus nutans 7 Diploid 1.00 True
rubus affinis 14 Polyploid 1.00 True 41.76
rubus rolfei 21 Polyploid 1.00 True 41.96
rubus caesius subsp. x 14 Polyploid 1.00 True 41.86
rubus bellardii 14 Polyploid 1.00 True 42.41
rubus longithyrsiger 14 Polyploid 1.00 True 41.88
rubus tiliaceus 14 Polyploid 1.00 True 41.89
rubus sachalinensis var. sachalinensis 14 Polyploid 1.00 True 42.47
rubus thyrsanthus 14 Polyploid 1.00 True 41.77
rubus hexagynus 14 Polyploid 1.00 True 41.51
rubus pseudidaeus 14 Polyploid 1.00 True 41.98
rubus taiwanicola 7 Diploid 1.00 True
rubus humilifolius 7 Diploid 1.00 True
rubus dalibarda 7 Diploid 1.00 True
rubus leucandrus 14 Polyploid 1.00 True 41.48
rubus tsangii 7 Diploid 1.00 True
rubus thelybatus 14 Polyploid 1.00 True 41.96
rubus gardenerianus 28 Polyploid 1.00 True 42.31
rubus hartmannii 14 Polyploid 1.00 True 42.85
rubus acuminatus 14 Polyploid 1.00 True 41.34
rubus contractipes 14 Polyploid 1.00 True 41.49
rubus hakonensis 21 Polyploid 1.00 True 41.75
rubus wallichianus 7 Diploid 1.00 True
rubus anatolicus 7 Diploid 1.00 True
rubus magnificus 14 Polyploid 1.00 True 41.56
rubus glandulosocalycinus 7 Diploid 1.00 True
rubus glandulosus 14 Polyploid 1.00 True 41.16
rubus lasquiensis 14 Polyploid 1.00 True 42.17
rubus chlorothyrsus 14 Polyploid 1.00 True 41.48
rubus rufus 14 Polyploid 1.00 True 42.69
rubus asper 7 Diploid 1.00 True
rubus australis var. cissoides 14 Polyploid 1.00 True 43.09
rubus innominatus var. kuntzeanus 7 Diploid 1.00 True
rubus nagasawanus 14 Polyploid 1.00 True 41.86
rubus australis var. schmidelioides 14 Polyploid 1.00 True 41.81
rubus lemurum 42 Polyploid 1.00 True 42.16
rubus reflexus var. hui 21 Polyploid 1.00 True 42.69
rubus idaeus subsp. melanolasius 14 Polyploid 1.00 True 41.30
rubus arcticus subsp. stellatus 7 Diploid 1.00 True
rubus buergeri f. pseudosieboldii 28 Polyploid 1.00 True 41.93
rubus obscurus 14 Polyploid 1.00 True 41.43
rubus hayata-koidzumii 14 Polyploid 1.00 True 43.07
rubus niveus var. concolor 14 Polyploid 1.00 True 42.22
rubus amygdalanthoides 14 Polyploid 1.00 True 41.43
rubus pedunculosus 7 Diploid 1.00 True
rubus longisepalus 7 Diploid 1.00 True
rubus cardotii 7 Diploid 1.00 True
rubus croceacanthus var. glaber 7 Diploid 1.00 True
rubus fraxinifolius 7 Diploid 1.00 True
rubus spribilleanus 14 Polyploid 1.00 True 41.40
rubus linearifoliolatus 7 Diploid 1.00 True
rubus parvifolius var. taquetii 14 Polyploid 1.00 True 42.34
rubus ikenoensis 7 Diploid 1.00 True
rubus subcrataegifolius 7 Diploid 1.00 True
rubus australis f. squarrosus 14 Polyploid 1.00 True 43.15
rubus granulatus 21 Polyploid 1.00 True 42.17
rubus lamprocaulus 14 Polyploid 1.00 True 42.41
rubus inopertus 7 Diploid 1.00 True
rubus insularis 14 Polyploid 1.00 True 41.83
rubus corylifolius 14 Polyploid 1.00 True 41.87



Phylogenetic Tree:


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Tree Legend: Blue: Diploids , Red: Polyploids
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